| Abbreviation | Species | Atlas space | Template name | Reference
|
|---|
| HumanCortex09 | Human | native | *Provided as is* Automatically labelled human cortex |
| HBA12 | Human | native | Allen Mouse Brain volumetric atlas 2012 |
| PHT00 | Macaque | native | Paxinos et al. 2000 |
| F99 | Macaque | native | F99 |
| EAZ05_v20 | Human | native | JuBrain cytoarchitectonic atlas by Amunts, Zilles et al., with maximum probability maps of Eickhoff et al. (2005) |
| LHAetal07 | Mouse | native | Allen Mouse Brain |
| ICBM152c | Human | native | |
| EAZ05_v18 | Human | native | Cytoarchitectonic segmentation of Eickhoff, Amunts, Zilles, et al. |
| BLHS13 | Mouse | native | Hippocampal atlas by Badhwar, Lerch, Hamel, Sled 2013 |
| NMM1103 | Human | native | Neuromorphometrics Inc. manually segmented brain |
| DLSKH08 | Mouse | native | Hippocampal atlas by Dorr et al 2008 |
| RM_on_F99 | Macaque | native | Regional Map 2005 |
| VLAetal11 | Rat | native | Population-averaged DTI atlas of the Sprague Dawley rat (Veraart et al. 2011) |
| CBWJ13_age_P80 | Rat | native | MRH Atlas of the developing brain: P80 |
| FVE91_on_F99 | Macaque | native | Felleman and Van Essen 1991 |
| FP08_contours | Mouse | native | Franklin and Paxinos 2008, contours |
| LVE00_on_F99 | Macaque | F99 | Lewis and Van Essen 2000 |
| MMFetal11_on_F99 | Macaque | native | parcellation from Markov, Misery, Falchier and 14 others (2011) |
| HOA06 | Human | native | Harvard-Oxford atlas as distributed with FSL |
| B05_on_Conte69 | Human | native | Brodmann 05 mapped onto Conte69 (2012) |
| WHS12_with_PLCJB14 | Mouse | native | WHS-Rat delineation in WHS-Mouse space |
| WHS11 | Mouse | native | Waxholm Space delineation 2011 |
| DB09 | Macaque | native | NeuroMaps Atlas |
| OPSM14 | Opossum | native | Multimodal atlas of gray short-tailed opossum brain (Chlodzinska, Majka et. al. 2014) |
| WHS10 | Mouse | native | Waxholm Space delineation 2010 |
| DB08 | Macaque | native | NeuroMaps Atlas |
| BIGB13_v0 | Human | native | Bigbrain resampled at 400 μm |
| ABA12 | Mouse | native | Allen Mouse Brain volumetric atlas 2012 |
| ABA_v3 | Mouse | native | Allen Mouse Brain Common Coordinate Framework version 3 |
| PHT00_on_F99 | Macaque | F99 | Paxinos et al. 2000 |
| PWPRT12 | Marmoset | native | Paxinos, Watson, Petrides, Rosa and Tokuno (2012) |
| KGBetal17 | Human | native | MindBoggle "OASIS-TRT-20 joint fusion" atlas |
| NMT_v2.0_sym | Macaque | native | NMT v2.0_sym Macaque atlas |
| VSNetal11 | Rat | native | An in vivo MRI Template (Valdés-Hernández, Sumiyoshi, Nonaka, et al. 2013) |
| NMM1103_freesurfer | Human | native | Freesurfer (version 6-beta) reconstruction of NMM1103 scan, in native coordinates. |
| MERetal14_on_F99 | Macaque | native | Markov et al. (2014) 91 cortical regions atlas, registered to F99 space |
| WHS09 | Mouse | native | Waxholm Space delineation 2009 |
| RMJetal13 | Rat | native | DTI Atlas of the P72 Rat Brain by Rumple et al. 2013 |
| CBCetal15 | Macaque | native | Calabrese et al. (2015) DTI atlas with Paxinos brain regions |
| TT88 | Human | native | Talairach Atlas |
| MERetal14 | Macaque | native | Markov et al. (2014) 91 cortical regions atlas |
| WHS12 | Mouse | native | Waxholm Space delineation 2012 |
| MERetal14_on_CBCetal15 | Macaque | native | Markov et al. (2014) 91 cortical regions atlas, warped to CBCetal15 space |
| ABA07 | Mouse | native | Allen Mouse Brain volumetric atlas 2007 |
| PLCJB14_v4 | Rat | native | WHS Sprague Dawley Rat Atlas version 4 |
| RMJetal13_age_P72 | Rat | native | DTI Atlas of the P72 Rat Brain (Rumple et al. 2013) |
| DB08_v0 | Macaque | native | NeuroMaps Atlas |
| MERetal14_on_F99_v0 | Macaque | native | parcellation from Markov, Ercsey-Ravas, Ribeiro Gomes, and 19 others (2014) |
| LPBA40_on_SRI24 | Human | SRI24 | SRI24/LBPA40 Multichannel Atlas |
| HumanBrain09 | Human | native | *Provided as is* Automatically labelled human brain |
| HSRetal17 | Ferret | native | Population based MRI/DTI atlas of the adult ferret by Hutchinson et al. (2017). |
| BN274 | Human | native | Brainnetome atlas based on connectivity profiles |
| WHS12_with_ABA12 | Mouse | native | Allen Mouse Brain volumetric atlas 2012 |
| PLCJB14 | Rat | native | Waxholm Rat (Papp, Leergaard, Calabrese, Johnson, Bjaalie 2014) |
| RGYetal16 | Macaque | native | Saleem-Logothetis 3d template |
| BIGB13 | Human | native | Bigbrain at 400 μm, with coronal zoom at 20 μm. |
| BNA | Human | native | Brainnetome atlas based on connectivity profiles |