Human - Harvard-Oxford atlas as distributed with FSL

Loading SVG...

[3d surface viewer]

Slice spacing:
FiducialFit widthVery wideIntermediate
Rotate view:

Hemisphere:

LeftRightBoth

Search:
Slice:

Loading SVG...

 

About this atlas

The Harvard-Oxford atlas is developed at the Center for Morphometric Analysis (CMA), and distributed with the FMRIB Software Library (FSL).

It comes with a probability distribution for each brain region, on display here is the cortical parcellation obtained from the Maximum A posteriori (MAP) estimate,

The defining citations for this atlas template are:

1. Makris N, Goldstein JM, Kennedy D, Hodge SM, Caviness VS, Faraone SV, Tsuang MT, Seidman LJ (2006) "Decreased volume of left and total anterior insular lobule in schizophrenia." Schizophr Res. 83(2-3):155-171. [doi 10.1016/j.schres.2005.11.020]
2. Frazier JA, Chiu S, Breeze JL, Makris N, Lange N, Kennedy DN, Herbert MR, Bent EK, Koneru VK, Dieterich ME, Hodge SM, Rauch SL, Grant PE, Cohen BM, Seidman LJ, Caviness VS, Biederman J (2005) "Structural brain magnetic resonance imaging of limbic and thalamic volumes in pediatric bipolar disorder." Am J Psychiatry 162(7):1256-1265
3. Desikan RS, Ségonne F, Fischl B, Quinn BT, Dickerson BC, Blacker D, Buckner RL, Dale AM, Maguire RP, Hyman BT, Albert MS, Killiany RJ (2006) "An automated labeling system for subdividing the human cerebral cortex on MRI scans into gyral based regions of interest." Neuroimage 31(3):968-980
4. Goldstein JM, Seidman LJ, Makris N, Ahern T, O'Brien LM, Caviness VS Jr, Kennedy DN, Faraone SV, Tsuang MT (2007) "Hypothalamic abnormalities in schizophrenia: sex effects and genetic vulnerability." Biol Psychiatry 61(8):935-945

• labels: Atlas labels
  The label index mapper converts label indices to acronyms, full names, and rgb-values.
  • ../../templates/HOA06/source/HarvardOxford-cort-maxprob-thr0-1mm.nii.gz; filesize 311 kB; shape [182x218x182]
• coronal_svg: Coronal sections of the label volume "HarvardOxford-cort-maxprob-thr0-1mm_smooth121.nii", converted to Scalable Vector Graphics.
  Brain regions are color-coded by the RGB to Acronym map, which can be chained with the Acronym to Fullname map.
  • ../../templates/HOA06/source/coronal_svg.zip; filesize 469 kB
• wholebrain_mesh: surface mesh of the entire brain
  • ../../templates/HOA06/wholebrain.x3d; filesize 3245 kB